Reaction-Diffusion Models

One of Alan Turing‘s many contributions to mathematics and science during the 20th century was his 1952 paper on “The Chemical Basis of Morphogenesis” in which he suggested that a simple model of coupled differential equations could account for pattern formation in natural processes such as those found on animal coats. Such models are known as Reaction-Diffusion models, and take the following general form
$\frac{\partial}{\partial t}\mathbf{q}=\mathbf{D}\nabla^2\mathbf{q}+\mathbf{R}(\mathbf{q})$

The equation describes how the concentration of each chemical components in q evolves as a function of the other components. I have chosen to illustrate the Gray-Scott model; the physical derivation of the reactant term is described in detail in [2], the addition of the diffusion term and the resultant behaviour in [3]. The model has two chemical components, U and V and is described as follows.
\begin{align*} \frac{\partial}{\partial t}U&=D_u\nabla^2U-UV^2+F(1-U) \\ \frac{\partial}{\partial t}V&=D_v\nabla^2V+UV^2-(F+k)V \end{align*}

The model is what is knows as an activator-inhibitor model, in which one chemical acts to inhibit the growth of the other.

Simulation

The simulation is implemented with Silverlight 2.0. For full details of the implementation see the separate post. For guidance in parameter selection, see [3], or just select a preset and modify it. Note that the Png image generation feature currently requires the Firefox browser.

References

1. Turing,A.,1952. The chemical basis of morphogenesis [pdf]. Philosophical Transactions of the Royal Society, 237 pp.37-72
2. Gray,P. and Scott,S.K. 1985. Sustained Oscillations and Other Exotic Patterns of Behavior in Isothermal Reactions. Journal of Physical Chemistry, 89 pp.22-32
3. Pearson,J.,1993. Complex patterns in a simple system. Science, 261(5118) pp.189-192
Tagged with: , , ,
Posted in Mathematics, Software