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	<title>PlanetMarshall &#187; Differential Equations</title>
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		<title>Reaction-Diffusion Models</title>
		<link>http://www.planetmarshall.co.uk/2009/03/reaction-diffusion-models/</link>
		<comments>http://www.planetmarshall.co.uk/2009/03/reaction-diffusion-models/#comments</comments>
		<pubDate>Mon, 23 Mar 2009 00:27:03 +0000</pubDate>
		<dc:creator>Andrew</dc:creator>
				<category><![CDATA[Mathematics]]></category>
		<category><![CDATA[Software]]></category>
		<category><![CDATA[C#]]></category>
		<category><![CDATA[Differential Equations]]></category>
		<category><![CDATA[Silverlight]]></category>

		<guid isPermaLink="false">http://www.planetmarshall.co.uk/?p=124</guid>
		<description><![CDATA[One of Alan Turing&#8217;s many contributions to mathematics and science during the 20th century was his 1952 paper on &#8220;The Chemical Basis of Morphogenesis&#8221; in which he suggested that a simple model of coupled differential equations could account for pattern formation in natural processes such as those found on animal coats. Such models are known [...]]]></description>
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<p class="pm_first"><span>O</span>ne of <a target="_new" href="http://en.wikipedia.org/wiki/Alan_Turing">Alan Turing</a>&#8217;s many contributions to mathematics and science during the 20th century was his <a href="#1_turing">1952 paper</a> on &#8220;The Chemical Basis of Morphogenesis&#8221; in which he suggested that a simple model of coupled differential equations could account for pattern formation in natural processes such as those found on animal coats. Such models are known as Reaction-Diffusion models, and take the following general form<br />
<center><img src="http://www.planetmarshall.co.uk/wp-content/cache/tex_7a2bc8ea1910cfbd65cd8f6e0f9d93db.png" align="absmiddle" class="tex" alt="\frac{\partial}{\partial t}\mathbf{q}=\mathbf{D}\nabla^2\mathbf{q}+\mathbf{R}(\mathbf{q})" /></center></p>
<p><span id="more-124"></span></p>
<p>The equation describes how the concentration of each chemical components in q evolves as a function of the other components. I have chosen to illustrate the Gray-Scott model; the physical derivation of the reactant term is described in detail in <a href="#2_grayscott">[2]</a>, the addition of the diffusion term and the resultant behaviour in <a href="#3_pearson">[3]</a>. The model has two chemical components, U and V and is described as follows.<br />
<center><img src="http://www.planetmarshall.co.uk/wp-content/cache/tex_0ce40140abea7929669115d693d6b1ea.png" align="absmiddle" class="tex" alt="\begin{align*}<br />
\frac{\partial}{\partial t}U&#038;=D_u\nabla^2U-UV^2+F(1-U) \\<br />
\frac{\partial}{\partial t}V&#038;=D_v\nabla^2V+UV^2-(F+k)V<br />
\end{align*}" /></center></p>
<p>The model is what is knows as an activator-inhibitor model, in which one chemical acts to inhibit the growth of the other.</p>
<h3>Simulation</h3>
<p>The simulation is implemented with <a href="http://www.silverlight.net" target="_new">Silverlight 2.0</a>. For full details of the implementation see the separate <a href="http://www.planetmarshall.co.uk/index.php/2009/04/implentation-of-the-reaction-diffusion-simulation/">post</a>. For guidance in parameter selection, see <a href="#3_pearson">[3]</a>, or just select a preset and modify it. Note that the Png image generation feature currently requires the <a target="_new" href="http://www.mozilla.com/firefox/">Firefox</a> browser.</p>
<p><div class="pm_header"><a onclick="pm_toggleCodeBlock(this,'4c516be2d1e9e')">&#x25ba;</a> Silverlight Application</div><div id="4c516be2d1e9e" style="display:none" class="silverlightControlHost"><object data="data:application/x-silverlight-2," type="application/x-silverlight-2" width="450" height="300"><param name="source" value="http://www.planetmarshall.co.uk/silverlight/ReactionDiffusion.xap"/><param name="background" value="#212121" /><!--<param name="minRuntimeVersion" value="2.0.31005.0" />--><param name="enableHtmlAccess" value="true" /><a href="http://go.microsoft.com/fwlink/?LinkID=124807" style="text-decoration: none;"><img src="http://storage.timheuer.com/sl4wp-ph.png" alt="Install Microsoft Silverlight" style="border-style: none; width:450px; height:300px"/></a></object><iframe style='visibility:hidden;height:0;width:0;border:0px'></iframe></div><br />
<h3>Gallery</h3>
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<h3>References</h3>
<ol>
<li><a name="1_turing"></a>Turing,A.,1952. <a target="_new" href="http://www.dna.caltech.edu/courses/cs191/paperscs191/turing.pdf">The chemical basis of morphogenesis [pdf]</a>. <i>Philosophical Transactions of the Royal Society</i>, 237 pp.37-72
</li>
<li><a name="2_grayscott"></a>Gray,P. and Scott,S.K. 1985. <a href="http://www.jstor.org/stable/2881810" target="_new">Sustained Oscillations and Other Exotic Patterns of Behavior in Isothermal Reactions.</a> <i>Journal of Physical Chemistry</i>, 89 pp.22-32
</li>
<li><a name="3_pearson"></a>Pearson,J.,1993. <a href="http://www.jstor.org/stable/2881810" target="_new">Complex patterns in a simple system.</a> <i>Science</i>, 261(5118) pp.189-192
</li>
</ol>
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